Identification and functional analysis of a serine protease inhibitor ...
Apr 1, 2024 · Subsequently, we utilized Foldseek [18], an algorithm designed for aligning the structure of a query protein with a database, to conduct structural clustering on 153 known …
An innovative user-friendly platform for Covid-19 pandemic …
Jan 1, 2021 · Objectives COVID-19 pandemic database (CO-19 PDB) aims to provide wonderful insights for COVID-19 researchers with the well-gathered of all the COVID-19 data to one …
CIPDB: A biological structure databank for studying cation and π ...
May 1, 2023 · Cation and π pairs were identified from the PDB database based on the geometrical parameters (distance ≤6.0 Å and R x ≤2.3 Å) using PLIP software. 61 Cation and …
FebRNA: An automated fragment-ensemble-based model for
Sep 20, 2022 · FebRNA involves a new structure building strategy through fragment assembly based on CG-level fragment ensembles: 1) establishing a library of non-redundant CG …
PDID: Database of Experimental and Putative Drug Targets in …
The template proteins come from a database of templates, typically defined as a set of nonredundant high-quality structures of drug-protein complexes curated from the PDB …
Validation of Structures in the Protein Data Bank - ScienceDirect
Dec 5, 2017 · The Worldwide PDB recently launched a deposition, biocuration, and validation tool: OneDep. At various stages of OneDep data processing, validation re…
SoluProtMutDB: A manually curated database of protein solubility ...
Jan 1, 2022 · The database comprises all the previously published solubility datasets and thousands of new data points from recent publications, including deep mutational scanning …
PredIDR: Accurate prediction of protein intrinsic disorder regions ...
Jan 1, 2025 · Similarly to the CAID2-Xray-PDB dataset, it is produced by comparing the non-X-ray annotations-based disorder regions of Disorder-NOX [7] dataset and the disorder regions of …
Overview of AlphaFold2 and breakthroughs in overcoming its …
Jun 1, 2024 · Unsurprisingly, researchers often leverage an existing and known protein structure from the PDB database to predict the structure of an unknown protein with a similar amino …
What are public development banks and development financing ...
Dec 1, 2021 · Public development banks and development financing institutions are experiencing renaissance worldwide, but systematic academic research is patchy. Th…